What Is Bioinformatics Custom Reporting?
Bioinformatics involves the analysis of huge amounts of data. This data can be analyzed and stored in a multitude of file types and formats depending on the stage and depth of analysis.
The applications of bioinformatics are also vast, which necessitates further diversity in reporting output. At Sampled, we provide reports on bioinformatics analysis that are customized precisely to our clients’ needs, no matter the application or stage of analysis. Our client-facing portal, SampledSphere, translated the raw data from our laboratory information management system (LIMS) into the format required by the client. This facilitates streamlining between our analysis and our clients’ systems which minimizes the need for data cleansing or reformatting on our clients’ end.
Why Use Sampled’s Bioinformatics Custom Reporting Service?
Analyzing and interpreting data from sequencing and microarray projects can be a difficult and time-consuming task. This is especially true when data is not available in a format that is easily manipulatable or interpretable. As such, many users may get stuck trying to reformat their data to suit their platform or are unable to parse the data due to software or hardware requirements. At Sampled, we offer custom bioinformatics reporting that is completely customizable to our clients’ needs. This means that no matter what format you need, Sampled’s team of experts is there to help. Fully customizable data reporting means you don’t need to worry about reformatting the data and can begin your own analysis or present preliminary results as soon as possible.
Sampled’s team of bioinformaticians has extensive experience working with all kinds of analysis and data types. Our team is there to help you choose the formatting and interface that best suits your needs.
We are Title 21 CFR part 11 and HIPAA compliant. SampledSphere is enabled with single sign-on and multifactor authentication and we encrypt data for transfer. If our clients want their data to be destroyed after the completion of a study, we also perform that service. At Sampled, we will never sell your data to a third party and all data we store is owned entirely by the client.
Bioinformatics Custom Reporting Applications
We work with a wide range of clients including academic laboratories, biopharmaceutical companies, and government agencies. As such the applications for our bioinformatics custom reporting service are practically endless.
- Disease identification
- Drug discovery
- Clinical trials
- Research studies
- Biomarker discovery
- Population health studies
- Novel genome assembly
- Disease modeling
- Development modeling
How Does Bioinformatics Custom Reporting Work?
Bioinformatics custom reporting is simple. You tell our team exactly how you want your data formatted and we do it. If you are not sure how you want your data to be presented, our team of experts is on hand to ensure you are getting the most important information from your data in a format that is easy to interpret.
Our team can customize data output from any level of analysis. For instance, analysis of next-generation genome sequencing data can fall into one of four tiers. For tier one, we can provide raw sequencing data files and quality control data. At tier two, we perform alignment to a reference genome. With tier three we compare samples to a reference genome and look for variants. Tier four involves meeting the customized requirements of our clients, such as describing the impact of variants on a patient in a clinical trial. We make data from every level of analysis immediately available to our clients.
We meet all of our client’s specifications for data export including file type, format, and labeling. We format data to match our client’s platform and specific security requirements and can upload it directly to their portal if they have one. We provide a manifest of precisely what the data is and where it is stored to ensure ease of accessibility.
What Are the Input Requirements for Bioinformatics Custom Reporting?
Bioinformatics custom reporting is the end point of our analytical pipeline here at Sampled. Thus, the results we report are derived from a wide variety of analytical requirements and sample types and from species including, but not limited to, human, mouse, and rat.
- Tissue biopsies
- Cell line samples/pellets
- Protein samples
- Isolated nucleic acids (DNA/RNA)
- Buccal swabs
The analytical requirements can include, but are not limited to:
- Illumina whole genome sequencing and whole exome sequencing with goals of small variant, and copy number variation calling
- Illumina Whole Transcriptome Analysis
- Illumina Bisulfite Sequencing for Methylation
- PacBio Sequencing
- Thermofisher Axiom Methylation Microarrays
- Thermofisher Axiom genotyping Microarrays
- Thermofisher Transcriptome Arrays
- Illumina Infinium Microarrays
- Olink protein biomarker discovery
- 10X Single Cell
- Genotyping by Sanger
We also accept raw sequencing data from our clients that has been generated elsewhere.
Find out more about our bioinformatics custom reporting service
Looking to perform bioinformatics analysis but have concerns about how to interpret the data in a way that makes sense for your project? Get in touch with one of Sampled’s experts today and discover how we can solve your problems with our bioinformatics custom reporting service.